PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 497aa    MW: 54765.6 Da    PI: 10.1224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010520360.1 68 FVCEICNKGFQRDQNLQLHRRGH 90
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.65E-76790No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496890IPR007087Zinc finger, C2H2
PfamPF121717.9E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035584110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-7140165No hitNo description
SMARTSM00355180145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMMPDDHLHL PFPNFVHQQE PINPNPNQNP NPTSAKPSKK RRNLPGTPDP DAEIIALSPK  60
SLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKDQVKKKVY VCPEKSCVHH  120
DPARALGDLT GIKKHYSRKH GEKKWKCEKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF  180
SRKDSFITHR AFCDALAEES AKFASVPPSV PTNINHQHQP PNATPSQLDP TLIGHGLNLN  240
GNTNVLFGQS YYTASAGLHP DQISPPMNIL ALSSSSPRGT FESLHNLWQL QGQSASHQWP  300
LNSNPNSSLQ RGLMPKNQED EIKKGSGGSG SRSLNPMTDP SLSSLFTPTN NNQNVQQQAA  360
YMSATALLQK AAQMGSTRSN SNGTTAAFGL MTSSLFNNTQ PNTNSIKKRT DTTENNQDSM  420
ANMKNKASMP SSSVGEAGGL TRDFLGVGRH EQQQQQHRLH HHLYPSNGAL MLKQNQPGFG  480
PATAGSAAID MGSTLLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520360.10.0PREDICTED: zinc finger protein JACKDAW
RefseqXP_010520361.10.0PREDICTED: zinc finger protein JACKDAW
SwissprotQ944L31e-151IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLE4MWC51e-167E4MWC5_EUTHA; mRNA, clone: RTFL01-07-P14
TrEMBLV4L1J51e-167V4L1J5_EUTSA; Uncharacterized protein
STRINGBra033840.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-137C2H2-like zinc finger protein